Showing all search results for Shewanella sediminis (strain HAW-EB3)

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Status Review
This status indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not. In other words, if the entry belongs to the Swiss-Prot section of UniProtKB (reviewed) or to the computer-annotated TrEMBL section (unreviewed).
Reference proteome
Average pLDDT
score
pLDDT is a per-residue measure of local confidence, scaled from 0 to 100. Higher scores indicate higher confidence and usually a more accurate prediction.
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Other organisms
 

Invasion gene expression up-regulator, SirB

Unreviewed
Reference proteome
AF-A8FYY4-F1-v4
Protein
Invasion gene expression up-regulator, SirB
Gene
Ssed_3453
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
88 (High)
Sequence length
133

D-aminoacyl-tRNA deacylase

Reviewed
Reference proteome
AF-A8FPZ5-F1-v4
Protein
D-aminoacyl-tRNA deacylase
Gene
dtd
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
98.11 (Very High)
Sequence length
147

Transcription antitermination protein NusB

Reviewed
Reference proteome
AF-A8FSR5-F1-v4
Protein
Transcription antitermination protein NusB
Gene
nusB
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
94.33 (Very High)
Sequence length
136

Protoheme IX farnesyltransferase

Reviewed
Reference proteome
AF-A8FPN0-F1-v4
Protein
Protoheme IX farnesyltransferase
Gene
cyoE
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
88.86 (High)
Sequence length
306
AF-A8FPK4-F1-v4
Protein
Ribosomal RNA small subunit methyltransferase J
Gene
rsmJ
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
89.76 (High)
Sequence length
260
AF-A8G084-F1-v4
Protein
3-methyl-2-oxobutanoate hydroxymethyltransferase
Gene
panB
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
97.51 (Very High)
Sequence length
266
AF-A8FVN6-F1-v4
Protein
3-phosphoshikimate 1-carboxyvinyltransferase
Gene
aroA
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
97.3 (Very High)
Sequence length
428

Thiazole synthase

Reviewed
Reference proteome
AF-A8FUV3-F1-v4
Protein
Thiazole synthase
Gene
thiG
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
93.19 (Very High)
Sequence length
256

NH(3)-dependent NAD(+) synthetase

Reviewed
Reference proteome
AF-A8FU90-F1-v4
Protein
NH(3)-dependent NAD(+) synthetase
Gene
nadE
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
95.4 (Very High)
Sequence length
278

Queuine tRNA-ribosyltransferase

Reviewed
Reference proteome
AF-A8FXC6-F1-v4
Protein
Queuine tRNA-ribosyltransferase
Gene
tgt
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
95.85 (Very High)
Sequence length
379

tRNA dimethylallyltransferase 1

Reviewed
Reference proteome
AF-A8FRD4-F1-v4
Protein
tRNA dimethylallyltransferase 1
Gene
miaA1
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
95.44 (Very High)
Sequence length
305

60 kDa chaperonin

Reviewed
Reference proteome
AF-A8FQY1-F1-v4
Protein
60 kDa chaperonin
Gene
groL
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
90.52 (Very High)
Sequence length
551

DNA-directed RNA polymerase subunit beta'

Reviewed
Reference proteome
AF-A8G1F4-F1-v4
Protein
DNA-directed RNA polymerase subunit beta'
Gene
rpoC
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
86.57 (High)
Sequence length
1407

Phosphoenolpyruvate carboxykinase (ATP)

Reviewed
Reference proteome
AF-A8G1J1-F1-v4
Protein
Phosphoenolpyruvate carboxykinase (ATP)
Gene
pckA
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
94.39 (Very High)
Sequence length
515

Serine--tRNA ligase

Reviewed
Reference proteome
AF-A8FV67-F1-v4
Protein
Serine--tRNA ligase
Gene
serS
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
96.51 (Very High)
Sequence length
430

ATP synthase subunit beta

Reviewed
Reference proteome
AF-A8G1W5-F1-v4
Protein
ATP synthase subunit beta
Gene
atpD
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
90.55 (Very High)
Sequence length
460
AF-A8FS64-F1-v4
Protein
tRNA N6-adenosine threonylcarbamoyltransferase
Gene
tsaD
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
96.64 (Very High)
Sequence length
339

Cyclic pyranopterin monophosphate synthase

Reviewed
Reference proteome
AF-A8G1M9-F1-v4
Protein
Cyclic pyranopterin monophosphate synthase
Gene
moaC
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
94.2 (Very High)
Sequence length
160

UPF0234 protein Ssed_3443

Reviewed
Reference proteome
AF-A8FYX4-F1-v4
Protein
UPF0234 protein Ssed_3443
Gene
Ssed_3443
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
96.32 (Very High)
Sequence length
163

50S ribosomal protein L19

Reviewed
Reference proteome
AF-A8FSF0-F1-v4
Protein
50S ribosomal protein L19
Gene
rplS
Source Organism
Shewanella sediminis (strain HAW-EB3) search this organism
UniProt
Average pLDDT
94.25 (Very High)
Sequence length
119