Showing all search results for Sphingobium sp. (strain NBRC 103272 / SYK-6)

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Status Review
This status indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not. In other words, if the entry belongs to the Swiss-Prot section of UniProtKB (reviewed) or to the computer-annotated TrEMBL section (unreviewed).
Reference proteome
Average pLDDT
score
pLDDT is a per-residue measure of local confidence, scaled from 0 to 100. Higher scores indicate higher confidence and usually a more accurate prediction.
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Other organisms
 
AF-G2ITT5-F1-v4
Protein
5,5'-dehydrodivanillate O-demethylase ferredoxin reductase subunit
Gene
ligXd
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.97 (Very High)
Sequence length
414

Syringate O-demethylase

Reviewed
Reference proteome
AF-G2IJ05-F1-v4
Protein
Syringate O-demethylase
Gene
desA
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
95.29 (Very High)
Sequence length
464

5,10-methylenetetrahydrofolate reductase

Reviewed
Reference proteome
AF-G2IQS8-F1-v4
Protein
5,10-methylenetetrahydrofolate reductase
Gene
metF
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
2 PDB structures for G2IQS8go to PDBe-KB
Average pLDDT
91.52 (Very High)
Sequence length
290
AF-G2IN04-F1-v4
Protein
5,5'-dehydrodivanillate O-demethylase oxygenase subunit
Gene
ligXa
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.11 (Very High)
Sequence length
426

Formate--tetrahydrofolate ligase

Reviewed
Reference proteome
AF-O66164-F1-v4
Protein
Formate--tetrahydrofolate ligase
Gene
fhs
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.51 (Very High)
Sequence length
560

2-pyrone-4,6-dicarboxylate hydrolase

Reviewed
Reference proteome
AF-O87170-F1-v4
Protein
2-pyrone-4,6-dicarboxylate hydrolase
Gene
ligI
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
4 PDB structures for O87170go to PDBe-KB
Average pLDDT
98.42 (Very High)
Sequence length
295

2-keto-4-carboxy-3-hexenedioate hydratase

Reviewed
Reference proteome
AF-G2IQQ5-F1-v4
Protein
2-keto-4-carboxy-3-hexenedioate hydratase
Gene
ligJ
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
3 PDB structures for G2IQQ5go to PDBe-KB
Average pLDDT
98.33 (Very High)
Sequence length
343

4-carboxy-4-hydroxy-2-oxoadipate aldolase

Reviewed
Reference proteome
AF-G2IQQ8-F1-v4
Protein
4-carboxy-4-hydroxy-2-oxoadipate aldolase
Gene
ligK
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.61 (Very High)
Sequence length
230
AF-G2IN77-F1-v4
Protein
5,5'-dehydrodivanillate O-demethylase ferredoxin subunit
Gene
ligXc
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
95.98 (Very High)
Sequence length
107

Vanillate/3-O-methylgallate O-demethylase

Reviewed
Reference proteome
AF-G2IQS7-F1-v4
Protein
Vanillate/3-O-methylgallate O-demethylase
Gene
ligM
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
7 PDB structures for G2IQS7go to PDBe-KB
Average pLDDT
96.44 (Very High)
Sequence length
473

Protein LigF

Reviewed
AF-P30347-F1-v4
Protein
Protein LigF
Gene
ligF
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.05 (Very High)
Sequence length
259

Beta-etherase

Reviewed
AF-P27457-F1-v4
Protein
Beta-etherase
Gene
ligE
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
93.19 (Very High)
Sequence length
283
AF-Q01198-F1-v4
Protein
C alpha-dehydrogenase
Gene
ligD
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
94.98 (Very High)
Sequence length
307
AF-P22635-F1-v4
Protein
Protocatechuate 4,5-dioxygenase alpha chain
Gene
ligA
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
2 PDB structures for P22635go to PDBe-KB
Average pLDDT
95.53 (Very High)
Sequence length
141
AF-P22636-F1-v4
Protein
Protocatechuate 4,5-dioxygenase beta chain
Gene
ligB
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Experimental structures
2 PDB structures for P22636go to PDBe-KB
Average pLDDT
96.5 (Very High)
Sequence length
304
AF-Q9KWL3-F1-v4
Protein
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase
Gene
ligC
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
96.34 (Very High)
Sequence length
317

AcnX domain-containing protein

Unreviewed
Reference proteome
AF-G2IKN5-F1-v4
Protein
AcnX domain-containing protein
Gene
SLG_27620
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
95.88 (Very High)
Sequence length
408

Uncharacterized protein

Unreviewed
Reference proteome
AF-G2ILN4-F1-v4
Protein
Uncharacterized protein
Gene
SLG_29520
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
41.09 (Very Low)
Sequence length
119

Uncharacterized protein

Unreviewed
Reference proteome
AF-G2ISQ1-F1-v4
Protein
Uncharacterized protein
Gene
SLG_17360
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
67.75 (Low)
Sequence length
52

Uncharacterized protein

Unreviewed
Reference proteome
AF-G2IPN5-F1-v4
Protein
Uncharacterized protein
Gene
SLG_35410
Source Organism
Sphingobium sp. (strain NBRC 103272 / SYK-6) search this organism
UniProt
Average pLDDT
88.06 (High)
Sequence length
367